Description:
WWW resources for biologists. (Moderated)
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electrostatic grid modelling using VMD
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Dear all, I am a beginner for VMD software, and currently try to practice VMD to get electrostatic grid of protein of my interest. I try to use the example of potsel.tcl usage in ([link]) source potsel.tcl mol pdbload 1bnf set sel [atomselect top "not water"]... more »
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Grid/Nano
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Dear All Due to I am working on a project I need some information. Any of you are working on Grid computing And/Or Nanomedicine Or Nanoinformatics? Thanks!
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Errors in protein structures
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Dear all, We announce the release of NQ-Flipper, a public service for the visualization and correction of unfavorable/incorrect asparagine and glutamine side-chain rotamers. For further information on the NQ-rotamer problem and the NQ-Flipper service see Weichenberger, Byzia & Sippl (2008), Visualization of unfavorable... more »
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TopMatch protein structure alignment and superposition web service
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We are pleased to announce the release of TopMatch-web, a public web service for the alignment and superposition of protein structures and the instant visualization of structural similiarities. We believe that TopMatch is an exceptionally effective, accurate, and enjoyable program for the investigation of protein structure similarities.... more »
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E-CAI: web server to estimate an expected value of CodonAdaptation Index (eCAI)
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The E-CAI server is a web-application and an executable program that calculates the expected value of the Codon Adaptation Index (CAI) for a set of query sequences by generating random sequences with similar G+C content and amino acid composition to the input. This expected CAI therefore provides a direct threshold value for discerning whether the... more »
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Event: Unlock Insight from Your Clinical Data
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[link] Event: Unlock Insight from Your Clinical Data Presenters Info: Hai Hu, Senior Director of Biomedical Informatics, Windber Research Institute Michael N. Liebman, Ph.D., Executive Director, Windber Research Institute & President and Managing Director, Strategic Medicine, Inc... more »
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New Google custom search engine for Bioinformatics journals:
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Dear all, We are happy to tell you that we just updated our Bioinformatics journals section with cool new features !!! 1) A list of 20 Bioinformatics related journals. When it was possible we associated to each journal, The web address, the impact factor, The RSS/Feed address and a view at a glance of the articles of the current... more »
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Google maps dedicated to Bionformatics jobs and Bioinformatics events
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Hi guys, Just to let you know that we recently launched two Google maps dedicated to Bioinformatics jobs and Bioinformatics events. So now it will be very easy to check if there is an available position or an upcoming event next to your place. The two Google maps are available at the following address :... more »
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OPTIMIZER: a web server for optimizing the codon usage of DNAsequences.
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I wish to introduce the OPTIMIZER web-server that optimizes the codon usage of a gene to increase its expression level. This web-server is focused on the heterologous, or even homologous, gene expression in bacterial hosts. Two indices, CAI and ENc (effective number of codons), are used to measure the optimization process.... more »
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