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bionet.software.staden

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wangk, … chinedu...@fmach.it3

8/17/14

Staden install on LINUX!

On Friday, September 15, 2006 3:01:01 AM UTC+2, Charles Plessy wrote: > Dear Kai, > > it

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Staden install on LINUX!

On Friday, September 15, 2006 3:01:01 AM UTC+2, Charles Plessy wrote: > Dear Kai, > > it

8/17/14

dr.bob....@gmail.com

7/5/12

I am looking for Rodger Staden.

I knew him many years ago at LMB. Does anyone have his coordinates?

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I am looking for Rodger Staden.

I knew him many years ago at LMB. Does anyone have his coordinates?

7/5/12

3/29/11

Biomedical and Bioinformatics Conference - Call for Papers

Appologies for multiple receptions ------------------------------------ Thank you for circulating

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Biomedical and Bioinformatics Conference - Call for Papers

Appologies for multiple receptions ------------------------------------ Thank you for circulating

3/29/11

9/22/10

Hi I am attempting to install Staden on a 64 bit Ubuntu 10.04 linux box with Phre/Phrap/Consed

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Hi I am attempting to install Staden on a 64 bit Ubuntu 10.04 linux box with Phre/Phrap/Consed

9/22/10

Abdul Rehman Khan

5/18/10

problem in heterozygous indels

Hi, I use staden for DNA sequence assembly and I use staden in windows. the sequence on which i am

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problem in heterozygous indels

Hi, I use staden for DNA sequence assembly and I use staden in windows. the sequence on which i am

5/18/10

Macarena Meneses O.

7/17/09

Hello !!! Please I would like to know about the meaning of some pregap4's error codes. In file

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Hello !!! Please I would like to know about the meaning of some pregap4's error codes. In file

7/17/09

6/17/09

How to install Staden 1.7.0 on Mac OS 10.5?

Hi, I have a stupid question. I'm trying to install Staden 1.7.0 on Mac OS 10.5. After I unzip

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How to install Staden 1.7.0 on Mac OS 10.5?

Hi, I have a stupid question. I'm trying to install Staden 1.7.0 on Mac OS 10.5. After I unzip

6/17/09

alig, Paul Donohue3

2/1/09

[Staden] gap4 running problem load_alignment_matrix error

Thank you, that fixed it & now I can run Gap4 so I'm very happy. This was the error I got

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[Staden] gap4 running problem load_alignment_matrix error

Thank you, that fixed it & now I can run Gap4 so I'm very happy. This was the error I got

2/1/09

12/8/08

phred and pregap4

Hello, I apologise in advance if this is a stupid question. I couldn't seem to find this in the

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phred and pregap4

Hello, I apologise in advance if this is a stupid question. I couldn't seem to find this in the

12/8/08

8/27/08

invalid command name "open_db"

Hello, staden-linux-1-6-0 here. It seems that 'open_db' is missing from this release?! I

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invalid command name "open_db"

Hello, staden-linux-1-6-0 here. It seems that 'open_db' is missing from this release?! I

8/27/08

7/25/08

permission for publication

Dear Staden developers, I would like to know if I need any special permission from you you to publish

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permission for publication

Dear Staden developers, I would like to know if I need any special permission from you you to publish

7/25/08

7/24/08

UNIX Trev (trace viewer) now freely available

Dear Staden developers, I am contacting you to find out whether I need to get a special permission

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UNIX Trev (trace viewer) now freely available

Dear Staden developers, I am contacting you to find out whether I need to get a special permission

7/24/08

1/16/08

Staden installation issues

Hi, I am unable to get staden to work. I essentially wish to use gap4. I downloaded the linux-bin and

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Staden installation issues

Hi, I am unable to get staden to work. I essentially wish to use gap4. I downloaded the linux-bin and

1/16/08

Derek Litthauer

12/7/07

[Staden] Re: gap4 running problem load_alignment_matrix gap.tcl

Hi I have installed staden on one of my 64 bit machines with Centos5. After some pain, it runs

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[Staden] Re: gap4 running problem load_alignment_matrix gap.tcl

Hi I have installed staden on one of my 64 bit machines with Centos5. After some pain, it runs

12/7/07

9/13/07

[Staden] Fwd: Error during installing Staden-src-1-7-0 package

Hallo Jean, .. I solved the problem you had using the following procedure: The problem is indeed the

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[Staden] Fwd: Error during installing Staden-src-1-7-0 package

Hallo Jean, .. I solved the problem you had using the following procedure: The problem is indeed the

9/13/07

8/18/07

I copied all the files from package staden-linux-1-6-0/linux-bin to staden-src-1-7-0/linux-bin. It

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I copied all the files from package staden-linux-1-6-0/linux-bin to staden-src-1-7-0/linux-bin. It

8/18/07

7/19/07

error while loading shared libraries: libtk_utils.so

Hi All I am not the first to experience this so a solution should be available (although I do not

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error while loading shared libraries: libtk_utils.so

Hi All I am not the first to experience this so a solution should be available (although I do not

7/19/07

5/6/07

Probs with pregap4

Hi, I'm having the same problem as a few others and I've yet to solve it. Every time I try to

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Probs with pregap4

Hi, I'm having the same problem as a few others and I've yet to solve it. Every time I try to

5/6/07

fourie....@gmail.com

3/28/07

Staden & ace / 454?

Hi Could anyone advise me about their experiences of getting 454 Newbler- assembled data into Staden?

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Staden & ace / 454?

Hi Could anyone advise me about their experiences of getting 454 Newbler- assembled data into Staden?

3/28/07

1/15/07

assembly problem with 6700 seq

Hi all. I'm not so new with Staden Package (integrated with phred/phrap/repeatmasker), but

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assembly problem with 6700 seq

Hi all. I'm not so new with Staden Package (integrated with phred/phrap/repeatmasker), but

1/15/07

Miguel Ortiz Lombardia, … Peter Rice3

11/1/06

using emboss programs from spin

Guy Bottu wrote: > Peter Rice from the EMBOSS team had promised to do some work on Staden > to

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using emboss programs from spin

Guy Bottu wrote: > Peter Rice from the EMBOSS team had promised to do some work on Staden > to

11/1/06

Laura Miozzi, David F. Spencer2

10/17/06

installing on linux

In article <mailman.1269.11598...@net.bio.net>, "Laura Miozzi" <

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installing on linux

In article <mailman.1269.11598...@net.bio.net>, "Laura Miozzi" <

10/17/06

9/28/06

prefinish for automated primer suggestion

Hello, I would like to use prefinish in an automated way to suggest primers for assembly finishing.

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prefinish for automated primer suggestion

Hello, I would like to use prefinish in an automated way to suggest primers for assembly finishing.

9/28/06

8/31/06

How to get staden 1.6.0 running under Mac OS X 10.3.9

Hi folks, i want to install staden 1.6.0 under Mac OS X 10.3.9. X11 is already installed and i

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How to get staden 1.6.0 running under Mac OS X 10.3.9

Hi folks, i want to install staden 1.6.0 under Mac OS X 10.3.9. X11 is already installed and i

8/31/06

Patrice Bouvagnet

7/24/06

Phred and Phrap exe

Hello dear Staden Package users, I received source code of Phred and Phrap because I am planning to

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Phred and Phrap exe

Hello dear Staden Package users, I received source code of Phred and Phrap because I am planning to

7/24/06

7/13/06

Benchmarking reassembly/Loading fasta files

Hi All, As part of my PhD project I'm working on a tool to benchmark reassembly algorithms. To do

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Benchmarking reassembly/Loading fasta files

Hi All, As part of my PhD project I'm working on a tool to benchmark reassembly algorithms. To do

7/13/06

6/19/06

Staden Package: new 1997.1 release

James, Roger, Not certain you are still at this address but I heard th e Gap package is continuing to

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Staden Package: new 1997.1 release

James, Roger, Not certain you are still at this address but I heard th e Gap package is continuing to

6/19/06

5/26/06

Installing STADEN on Mac 10.4 Tiger

Hi, Could anyone help me here. I have actually dounloded the Mac Version of Staden on my desktop. I

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Installing STADEN on Mac 10.4 Tiger

Hi, Could anyone help me here. I have actually dounloded the Mac Version of Staden on my desktop. I

5/26/06

Duarte Molha, Bastien Chevreux2

5/17/06

Solving transposon problems on genome assembly

Duarte Molha wrote: > I am working on the sequencing of a microorganism and altough the main >

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Solving transposon problems on genome assembly

Duarte Molha wrote: > I am working on the sequencing of a microorganism and altough the main >

5/17/06

Damien, Paul Donohue3

4/26/06

gap4 does not run

Thank you very much. Now it works great. Damien Paul Donohue wrote: > http://www.bio.net/bionet/mm

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gap4 does not run

Thank you very much. Now it works great. Damien Paul Donohue wrote: > http://www.bio.net/bionet/mm

4/26/06

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