Description:
Discussions by users of genome DBs using ACEDB. (Moderated)
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Bioinformatics Scientist Position
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Bioinformatics Scientist Mendel Biotechnology, Inc. is looking for an individual to lead an important project to collect, organize and analyze data with the goal of improving traits in Miscanthus and other plants for use as biofeedstocks. You will work with biologists, agronomists, business people, and computer... more »
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Acedb on OS X 10.5 (Leopard)
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The 4.9.39 binaries of xace and tace will work on Leopard...with a little help. You need to also install glib and gtk+. In the past I have done this by using the fink project ([link]). However, the version of glib available under fink doesn't meet the specifications of what acedb needs. So, I tried installing MacPorts (http://... more »
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Bionet public archives and privacy
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All, Please read the below from Don Gilbert who supervises/coordinates much of the bionet archives. I'm not aware of any issues for acedb but if you have concerns you should probably contact me directly in the first instance. Ed
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to Jhon: 139 error
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Hello Jhon, I got error message "Error status = 139" while loading data into acedb. Do you know what that means? ------------------------------ -- ------------------------------ -- Best Regards, Alveksei <a href="[link]">diabetes weblog</a>
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Acedb bug....
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All, Following a report by a user at Sanger I have found a serious bug has been introduced into the way acedb parses in data, the bug has been in the code for several years so its surprising it has not come to light before. The problem can be summarised as follows, if you parse in the following file:... more »
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BIRD: Deadline Extension: Sepptember 22 2006
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*CALL FOR PAPERS* *&* *CALL FOR POSTERS* * * * * *1st International Conference* *on* * * *Bioinformatics Research and Development* * B I R D '07*** *[link] <[link]>** * * *Berlin**, Germany*** *March 12-14, 2007* *Keynote Talk:* * * *Josef Penninger* Institute of Molecular Biotechnology (IMBA)... more »
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acedb 4.9 news.
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All, I tried to post this a couple of days ago but it seems not to have go through. Time moves on and the GTK graphics toolkit that acedb 4.9.* uses has moved on a lot. Currently acedb 4.9 is compiled against GTK version 1.2 and the latest stable version of GTK is version 2.6. GTK 1.2 is now not regularly installed... more »
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subscribe
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subscribe can i subscribe to that list
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Protein subclass
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hi all, I am trying to define a subclass named Protein, but this doesn't work with any tested xace versions (current supported or daily) Is this forbidden? If yes, shouldn't xace/tace complain when it reads the models? Here is a small example to illustrate: ...$ more models.wrm ?Ligand Protein Sugar... more »
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acediff bug
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hi all, I've run into what looks like a bug in acediff. This happens with all versions I've tested, ie today's daily build and the current supported build, both with dynamically linked binaries. I've also tested the current supported static build, same result. All of this, on linux (FC4, kernel 2.6.14-1.1656_FC4 on a pentium4 system)... more »
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