Description:
Information about software for biology. (Moderated)
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in silico ARDRA
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Dear all, I am working on in silico ARDRA of a group of bacteria, i got the rDNA sequences from RDP ,but now i am confuse . At first i generated in silico patterns with software, and i want to compare pattern with each other to choose the best restriction enzymes from 11 enzymes that i have been used in in silico analysis.... more »
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Jameson-Wolf Antigenic Index
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Does anyone know any freeware tool, or any website that uses the Jameson-Wolf antigenic algorithm? Thanks Teresa
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Other: another followup (apology)
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Hi all - I would like to offer my apology to Accelrys and its employees for suggesting that the company would not follow through on their commitment to supply non-node-locked, non-expiring license keys to all current GCG custyomers with "perpetual" licenses. As I mentioned in my last posting Accelrys is now involved in that process and I have received my new key.... more »
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Subunit Vaccine Design
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Dear Colleagues We have created a database "PRRDB: A comprehensive database of Pattern-Recognition Receptors and their ligands". This database will be very useful for those working in the field of computer aided subunit vaccine or peptide design, particularity interested in designing better adjuvants based on innate immunity. Please have a... more »
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Inconsistent PDB file formats
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Hi, PDB files are not Perfect. Infact, using an automated program, retrieving information from a PDB file is hard as its format is not consistent. For example, the missing coordinate informarion is usually given in REMARK 465 and 470. But if we check for protein 2FL8 there is no REMARK 465 or 470, instead... more »
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Other: followup to Accelrys petition followup
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Hello all - A brief note to let you know what's happened since my posting this last Wednesday: Rob Brown of Accelrys did contact me, finally. He says, and I quote: "The petition and the subsequent BioInform article produced a significant response and generated inquiries from a number of third party companies... more »
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Other: Accelrys petition followup
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Hi all - re. [link] A huge THANKS to all of you that signed my petition! Within the first week online I got almost 150 signatures, and John Devereux himself most recently signed it. I sent Rob Brown of Accelrys an 'official' copy of the petition and the signatures at the end of last month. However, but... more »
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KARUNYA UNIVERSITY(Department of Bioinformatics)
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The Department of Bioinformatics in Karunya University was started in the year 2005. The objective is to provide excellent teaching, learning including practical training, research facilities and consultancy services in the frontier areas of Bioinformatics. The course is designed to provide advanced research and... more »
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Inquire help about DCSE format of sequences
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Dear all, Hi! I am a Ph.D student at the Institute of Hydrobiology, Chinese Academy of Sciences. I am writing hereby to inquire your help on the problem of converting gene squences into DCSE format. I try to use the software RnaViz for producing some secondary structure drawings of RNA molecules,... more »
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