Google Groups no longer supports new Usenet posts or subscriptions. Historical content remains viewable.
Dismiss

Vector NTI Replacement

1 view
Skip to first unread message

Holt, Ben F. III

unread,
Nov 24, 2009, 12:19:30 PM11/24/09
to arab...@magpie.bio.indiana.edu
Hi All,

I am curious to hear what others are using for managing and manipulating their DNA sequences on the computer. We have used VectorNTI for years, but now that they have switched to the annual fee, we would like to consider alternatives.

Thoughts?
Ben

========
Ben Holt
Assistant Professor
University of Oklahoma
Department of Botany and Microbiology
GLCH Rm 219
770 Van Vleet Oval
Norman, OK 73019
Phone (405)325-9018
FAX (405)325-7619
http://www.ou.edu/cas/botany-micro/faculty/holt.html


Allan

unread,
Nov 26, 2009, 1:07:53 AM11/26/09
to bionet-genom...@moderators.isc.org
On Nov 24, 9:19�am, "Holt, Ben F. III" <benh...@ou.edu> wrote:
> Hi All,
>
> I am curious to hear what others are using for managing and manipulating their DNA sequences on the computer. We have used VectorNTI for years, but now that they have switched to the annual fee, we would like to consider alternatives.
>
> Thoughts?
> Ben
>
> ========
> Ben Holt
> Assistant Professor
> University of Oklahoma
> Department of Botany and Microbiology
> GLCH Rm 219
> 770 Van Vleet Oval
> Norman, OK �73019
> Phone (405)325-9018
> FAX � (405)325-7619http://www.ou.edu/cas/botany-micro/faculty/holt.html

Hi Ben,

ApE is a favorite of mine. I find it handy for designing constructs
and handling sequencing data.

http://www.biology.utah.edu/jorgensen/wayned/ape/

**I am not affiliated with the author in any way**

-Allan

Ehud Katz

unread,
Nov 25, 2009, 2:18:41 PM11/25/09
to arab...@magpie.bio.indiana.edu
We are using ApE, an open-source software that is capable to do the
gateway reactions. You can download it from here:

http://www.biology.utah.edu/jorgensen/wayned/ape/

You can drag and drop VNTI files into it and work from there.

Good luck !

udi

*********************************

Ehud Katz

Postdoctoral fellow

Department of Plant Sciences,

Plant Reproductive Biology, Mail Stop 5

University of California

One Shields Ave,

Davis, CA 95616

Phone No.: 530-7547322

e-mail: ek...@ucdavis.edu

0 new messages