BioGPS

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Welcome to the BioGPS Google Group. This forum is used for all discussions, suggestions, comments, bug reports, and feature requests related to the BioGPS web site. Questions can be sent to biogps -at- googlegroups -dot- com, or they can be posted using the "new post" button below.

NEW: Questions and feature requests can also be posted to https://getsatisfaction.com/biogps.

A few important notes:

Anyone is welcome to join this group as a member, but joining is not required to post a question.
Messages from non-members are moderated, so please allow up to 24 hours for your message to show up here before resending.
All emails and posts will be publicly posted in the Google Group archives (which can be viewed below).
To send a private email to developers, please email biogps.admin -at- gmail -dot- com.
If you are submitting a new bug report please include as many details as possible about what you are seeing. Telling us what browser version you are using is often helpful as well.
If you are having issues with BioGPS, please use our self-help guide to ensure you send us the information we need in order to help you

To subscribe to the related BioGPS Announcements group, please see http://groups.google.com/group/biogps-announce.

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BioGPS Help Desk2

7/25/20

Re: Human data unavailable?

Dear Iman, We have now fixed the issue impacting human genes. It was introduced recently on our data

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Re: Human data unavailable?

Dear Iman, We have now fixed the issue impacting human genes. It was introduced recently on our data

7/25/20

Byrne, Gerry, G Tsueng2

6/5/17

porcine B4GALNT2

Hi, We don't have as many pig datasets, but the pig atlas may have this gene (at least it's

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porcine B4GALNT2

Hi, We don't have as many pig datasets, but the pig atlas may have this gene (at least it's

6/5/17

Charles Harris, G Tsueng2

5/24/17

mouse cell lines

You can browse and search through mouse data sets here: http://biogps.org/dataset/species/mouse/ You

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mouse cell lines

You can browse and search through mouse data sets here: http://biogps.org/dataset/species/mouse/ You

5/24/17

Shon Green, G Tsueng2

4/28/17

Definition of CD34+ cells in your portal

Hi, If you're talking about the CD34+ cells from the Human U133A/GNF1H Gene Atlas data set, you

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Definition of CD34+ cells in your portal

Hi, If you're talking about the CD34+ cells from the Human U133A/GNF1H Gene Atlas data set, you

4/28/17

Dan Beisner, … Andrew Su4

4/4/17

Default data sets for gene expression change?

Hi Dan, I'm pretty sure the issue here is that the gene you queried does not have any data in the

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Default data sets for gene expression change?

Hi Dan, I'm pretty sure the issue here is that the gene you queried does not have any data in the

4/4/17

Nivashini KALIAPERUMAL, G Tsueng2

3/30/17

Query on probesets

Hi Nivashini, You can find an explanation of the different probeset naming conventions on

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Query on probesets

Hi Nivashini, You can find an explanation of the different probeset naming conventions on

3/30/17

Hagan, Rob, Andrew Su4

3/27/17

Is BioGPS down?

Dear Rob, It looks like this problem is now fixed -- can you confirm? For your help eradicating bugs,

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Is BioGPS down?

Dear Rob, It looks like this problem is now fixed -- can you confirm? For your help eradicating bugs,

3/27/17

Marwa Said, G Tsueng2

3/22/17

Hi, BioGPS does not store FASTA files nor are there any plugins currently available for handling

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Hi, BioGPS does not store FASTA files nor are there any plugins currently available for handling

3/22/17

Nikhita Shankar, G Tsueng2

3/22/17

Unable to save expression images

Hi, Unfortunately, this issue cannot be replicated with so little information. Can you provide the

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Unable to save expression images

Hi, Unfortunately, this issue cannot be replicated with so little information. Can you provide the

3/22/17

h.moo...@gmail.com, G Tsueng2

3/17/17

Searching BioGPS through R statistical software

Hi Hossein, We use MyGene.info services for ID conversion. There is an R package available via

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Searching BioGPS through R statistical software

Hi Hossein, We use MyGene.info services for ID conversion. There is an R package available via

3/17/17

Hossein Moosavi

3/17/17

Searching BioGPS through R statistical software

Dear BioGPS team, I would like to thank you for your great job. I am just wondering if there is a

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Searching BioGPS through R statistical software

Dear BioGPS team, I would like to thank you for your great job. I am just wondering if there is a

3/17/17

Ivanov, Sergey, G Tsueng2

2/16/17

low resolution images

Hi Sergey, I believe the plugin that creates these images uses a script to automatically size the

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low resolution images

Hi Sergey, I believe the plugin that creates these images uses a script to automatically size the

2/16/17

Vivek Singh, G Tsueng2

2/16/17

i can't download the image please help me.

Can you post a screenshot of what you see when you click on the 'static image' tab of the

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i can't download the image please help me.

Can you post a screenshot of what you see when you click on the 'static image' tab of the

2/16/17

Hernandez Cordero, Ana Isabel, G Tsueng2

1/25/17

Hi Ana, Can you clarify which data set you were looking at? thanks, ginger On Tuesday, January 24,

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Hi Ana, Can you clarify which data set you were looking at? thanks, ginger On Tuesday, January 24,

1/25/17

Julio Castaneda, G Tsueng2

1/16/17

Rnase12 (RNase A family, 12)

Hi Julio, Can you specify which dataset you were looking at? best wishes, ginger On Thursday, January

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Rnase12 (RNase A family, 12)

Hi Julio, Can you specify which dataset you were looking at? best wishes, ginger On Thursday, January

1/16/17

Ren Zhili, G Tsueng5

12/1/16

dataset GSE10246

Hi Ginger, Thank you very much! All the best, Zhili ------------ Ren Zhili Faculty of Health Sciences

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dataset GSE10246

Hi Ginger, Thank you very much! All the best, Zhili ------------ Ren Zhili Faculty of Health Sciences

12/1/16

landen...@gmail.com, G Tsueng2

11/21/16

How do I view the expression of the gene per cell line?

Hi! You will need to pick a data set that has the cell lines you are interested in viewing. If you

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How do I view the expression of the gene per cell line?

Hi! You will need to pick a data set that has the cell lines you are interested in viewing. If you

11/21/16

NICHOLSON Bonnie, G Tsueng2

11/8/16

individual animal data

Hi Bonnie, 1428622_at appears to be a probeset, not the dataset, so the samples will vary depending

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individual animal data

Hi Bonnie, 1428622_at appears to be a probeset, not the dataset, so the samples will vary depending

11/8/16

Dan Beisner, … Andrew Su5

11/3/16

MGI plugin for BIoGPS

Hi Dan, Thanks for the bug report -- the issue has now been fixed. When viewing a human gene, the

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MGI plugin for BIoGPS

Hi Dan, Thanks for the bug report -- the issue has now been fixed. When viewing a human gene, the

11/3/16

abraham azoz, G Tsueng2

11/2/16

i have questions

Hi Ibrahim, Please see this post or this discussion on researchgate for an explanation of units in

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i have questions

Hi Ibrahim, Please see this post or this discussion on researchgate for an explanation of units in

11/2/16

Wendy Dean, G Tsueng2

11/2/16

What has happened to the Data set GNF1 gcrma

The dataset is here: http://biogps.org/dataset/BDS_00009/geneatlas-gnf1m-gcrma/ best wishes, ginger

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What has happened to the Data set GNF1 gcrma

The dataset is here: http://biogps.org/dataset/BDS_00009/geneatlas-gnf1m-gcrma/ best wishes, ginger

11/2/16

cbaile...@gmail.com, G Tsueng2

11/1/16

Navigation Window

Hi there, I'm assuming you mean the gene selection window which disappears when you click on the

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Navigation Window

Hi there, I'm assuming you mean the gene selection window which disappears when you click on the

11/1/16

Naylor, Helen, G Tsueng3

9/16/16

Cardiomyocytes in GeneAtlas U133A, gcrma dataset

Thanks so much!! helen From: G Tsueng [mailto:gts...@gmail.com] Sent: Friday, September 16, 2016 9:

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Cardiomyocytes in GeneAtlas U133A, gcrma dataset

Thanks so much!! helen From: G Tsueng [mailto:gts...@gmail.com] Sent: Friday, September 16, 2016 9:

9/16/16

Taposh Dutta-Roy, G Tsueng2

8/22/16

Data Download for Predictive Analytics

Hi Taposh, please see FAQ #2: http://biogps.org/faq/ You can find the appropriate publications for

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Data Download for Predictive Analytics

Hi Taposh, please see FAQ #2: http://biogps.org/faq/ You can find the appropriate publications for

8/22/16

Rajasekhar Moturi, … G Tsueng4

8/8/16

HI Raja, -To my knowledge, even the 'raw' or unaveraged values have already been gcmra-

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HI Raja, -To my knowledge, even the 'raw' or unaveraged values have already been gcmra-

8/8/16

Rajasekhar Moturi, G Tsueng2

8/8/16

RE:NCI60_cell_line

Hi Raja, Thanks for bringing this to our attention! It may be the way the two samples were named that

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RE:NCI60_cell_line

Hi Raja, Thanks for bringing this to our attention! It may be the way the two samples were named that

8/8/16

Yamani, Amnah, G Tsueng2

8/4/16

finding articles

Hi Amnah, The appropriate publications will depend on the dataset you're looking at. If you'

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finding articles

Hi Amnah, The appropriate publications will depend on the dataset you're looking at. If you'

8/4/16

7/30/16

Re: [BioGPS] Question Regarding your Gene Correlation

Dear Colin, The computed correlation value is a Pearson correlation. As you probably know, you can

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Re: [BioGPS] Question Regarding your Gene Correlation

Dear Colin, The computed correlation value is a Pearson correlation. As you probably know, you can

7/30/16

ROBERT SERTORI, Andrew Su2

7/30/16

This plugin is not available for this gene: il13ra1(zebrafish, 799475)

Dear Robert, Were you intending to look at the zebrafish gene specifically? We don't have much/

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This plugin is not available for this gene: il13ra1(zebrafish, 799475)

Dear Robert, Were you intending to look at the zebrafish gene specifically? We don't have much/

7/30/16

Harry Michael Georgiou, G Tsueng2

7/1/16

Hi Dr. Harry! Thanks for using BioGPS! There are multiple default data sets available. The plugin

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Hi Dr. Harry! Thanks for using BioGPS! There are multiple default data sets available. The plugin

7/1/16

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