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HITESH JOSHI
3/24/17
Starting bio4j project
Hi, I'm a student of biotechnology and interested in doing this project so from where, I can
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Starting bio4j project
Hi, I'm a student of biotechnology and interested in doing this project so from where, I can
3/24/17
Stephen Coleman
,
Pablo Pareja Tobes
11
10/22/15
Non-AWS install v0.12
OK let me know then if you ran into any other issues. Cheers, Pablo On Wed, Oct 21, 2015 at 8:19 PM,
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Non-AWS install v0.12
OK let me know then if you ran into any other issues. Cheers, Pablo On Wed, Oct 21, 2015 at 8:19 PM,
10/22/15
rishi shah
,
Pablo Pareja Tobes
3
8/24/15
Possible projects to contribute
Hi Pablo, I gave you reply by an email. Did you get my email ? -Rishi On Friday, August 14, 2015 at
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Possible projects to contribute
Hi Pablo, I gave you reply by an email. Did you get my email ? -Rishi On Friday, August 14, 2015 at
8/24/15
Yaw Nti-Addae
4/4/15
Importing new data into graph database
I've tried looking for documentation and examples but could not find anything that clearly
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Importing new data into graph database
I've tried looking for documentation and examples but could not find anything that clearly
4/4/15
Pablo Pareja Tobes
3/23/15
Bio4j preprint available
Hi everyone! We are really excited to announce that we already have a citable preprint in the bioRxiv
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Bio4j preprint available
Hi everyone! We are really excited to announce that we already have a citable preprint in the bioRxiv
3/23/15
Pablo Pareja Tobes
3/13/15
Bio4j: updates
Hi everyone! Check out our last blog post to see the big set of new features and improvements we
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Bio4j: updates
Hi everyone! Check out our last blog post to see the big set of new features and improvements we
3/13/15
Eduardo Pareja Tobes
, …
Jasdeep Singh
4
2/23/15
Google Summer of Code 2015 - ideas
Hey Jasdeep We still don't know if we're accepted for this year, let's hope so :) Anyway,
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Google Summer of Code 2015 - ideas
Hey Jasdeep We still don't know if we're accepted for this year, let's hope so :) Anyway,
2/23/15
egbe eugene
, …
Eduardo Pareja-Tobes
5
2/16/15
Quick Guide
Or just ask at https://gitter.im/bio4j/bio4j or https://gitter.im/bio4j/gsoc15 cheers On Fri Feb 13
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Quick Guide
Or just ask at https://gitter.im/bio4j/bio4j or https://gitter.im/bio4j/gsoc15 cheers On Fri Feb 13
2/16/15
Milton Yutaka Nishiyama Junior
, …
Andrei Kucharavy
9
11/17/14
Bioinformatics: Metabolic Pathways in Graph databases
Hi Eduardo, I tried to send this message for the group, but I think that it didn't work. Could
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Bioinformatics: Metabolic Pathways in Graph databases
Hi Eduardo, I tried to send this message for the group, but I think that it didn't work. Could
11/17/14
Pablo Pareja Tobes
10/30/14
Bio4j goes to Google Summer of Code mentor summit 2014
Hi everyone! I just wrote a new blog post describing our experience at the Google Summer of Code
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Bio4j goes to Google Summer of Code mentor summit 2014
Hi everyone! I just wrote a new blog post describing our experience at the Google Summer of Code
10/30/14
Pablo Pareja Tobes
10/20/14
Re: Contributing to bio4j
Hi Parminder, Cool to hear that you're interested in contributing to Bio4j ;) Do you already have
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Re: Contributing to bio4j
Hi Parminder, Cool to hear that you're interested in contributing to Bio4j ;) Do you already have
10/20/14
Pablo Pareja Tobes
2
10/9/14
Re: Interested in working on a project with bio4j
Hi Anirudh, > Do you mean to say that allowing end users to query based on specific bio4j
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Re: Interested in working on a project with bio4j
Hi Anirudh, > Do you mean to say that allowing end users to query based on specific bio4j
10/9/14
Ayush Gupta
, …
Pablo Pareja Tobes
10
7/23/14
Trying to Use Bio4j for project...How do I start?
Hi Piyush, Sorry for the delay but your message got somehow lost in my inbox and I just saw it...
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Trying to Use Bio4j for project...How do I start?
Hi Piyush, Sorry for the delay but your message got somehow lost in my inbox and I just saw it...
7/23/14
Mark Farrell
, …
Pablo Pareja Tobes
4
7/15/14
Can bio4j be used to aggregate journal articles from various sources on the web?
Hi Mark, First of all let me clarify that Bio4j only includes citations such as journal articles,
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Can bio4j be used to aggregate journal articles from various sources on the web?
Hi Mark, First of all let me clarify that Bio4j only includes citations such as journal articles,
7/15/14
Kaushik Hatti
,
Pablo Pareja Tobes
5
7/9/14
DownloadAndPrepareBio4jSources.sh file not found on GitHub
Hi Pablo, Thanks so much! I will go through it and get familiarised. I was trying represent Protein
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DownloadAndPrepareBio4jSources.sh file not found on GitHub
Hi Pablo, Thanks so much! I will go through it and get familiarised. I was trying represent Protein
7/9/14
roald...@student.uclouvain.be
,
Piyush Uthra
2
6/23/14
Importing a piece of a module
I also am doing a similar project. Any help on this topic will be highly appreciated. Thank you. On
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Importing a piece of a module
I also am doing a similar project. Any help on this topic will be highly appreciated. Thank you. On
6/23/14
Detlef Bohm
,
Pablo Pareja Tobes
5
6/20/14
Broken link or repository ?
Hi Detlef, Thanks a lot for the update, I just checked it out again and it seems to be working now ;)
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Broken link or repository ?
Hi Detlef, Thanks a lot for the update, I just checked it out again and it seems to be working now ;)
6/20/14
roald...@student.uclouvain.be
6/12/14
Type of queries on Bio4J
Hello, I'm doing my master thesis on : "Design of an in-memory biochemical database for
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Type of queries on Bio4J
Hello, I'm doing my master thesis on : "Design of an in-memory biochemical database for
6/12/14
wen yu
,
Pablo Pareja Tobes
4
5/20/14
Advice: Neo4j or Titan
Hi Wen, Maybe the best thing to do could be: 1. keep your data 2. "cut" the edges linking
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Advice: Neo4j or Titan
Hi Wen, Maybe the best thing to do could be: 1. keep your data 2. "cut" the edges linking
5/20/14
Daniel McClanahan
,
Pablo Pareja Tobes
3
5/15/14
documentation on how to create and access bio4j db is unclear
Brilliant, I'll keep a watchful eye out for that release. Thanks for the update! On Thursday, May
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documentation on how to create and access bio4j db is unclear
Brilliant, I'll keep a watchful eye out for that release. Thanks for the update! On Thursday, May
5/15/14
Alexander Stoddard
, …
Sandeep Shantharam
6
4/1/14
Errors with setup of non-AWS Bio4j v0.9
Hi, Any Update on this, it would be good - if you could just provide the JAR file for importing the
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Errors with setup of non-AWS Bio4j v0.9
Hi, Any Update on this, it would be good - if you could just provide the JAR file for importing the
4/1/14
roald...@student.uclouvain.be
3/25/14
Titan DB
Hi, I try to use the titan implementation of Bio4J. I've clone https://github.com/bio4j/titandb.
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Titan DB
Hi, I try to use the titan implementation of Bio4J. I've clone https://github.com/bio4j/titandb.
3/25/14
Yigang Zhou
, …
Pablo Pareja Tobes
10
3/21/14
Inquring: Cytoscape app plugin for bio4j (GSoC 2014 project) From Yigang Zhou
Hi, There's much to be discussed for further details. Since the deadline is approaching, I just
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Inquring: Cytoscape app plugin for bio4j (GSoC 2014 project) From Yigang Zhou
Hi, There's much to be discussed for further details. Since the deadline is approaching, I just
3/21/14
shubham singhal
,
Eduardo Pareja Tobes
4
3/19/14
DynamoDB backed bio4J prototype
Right Eduardo. Most of the text is from the link you mentioned in previous mail. But since DynamoDB
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DynamoDB backed bio4J prototype
Right Eduardo. Most of the text is from the link you mentioned in previous mail. But since DynamoDB
3/19/14
shashank juyal
3/19/14
Bio4j Gephi Toolkit
Hi, I have a little doubt about the Gephi Project. Is it the layout algorithms (Yi-Fan Hu, Force
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Bio4j Gephi Toolkit
Hi, I have a little doubt about the Gephi Project. Is it the layout algorithms (Yi-Fan Hu, Force
3/19/14
Siddarth Ravishankar
, …
roald...@student.uclouvain.be
8
3/10/14
executionsBio4j.xml , batchInserter.properties and uniprotData.xml files missing
Ok thanks, i'll look at this ! Le lundi 10 mars 2014 11:51:22 UTC+1, Eduardo Pareja Tobes a écrit
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executionsBio4j.xml , batchInserter.properties and uniprotData.xml files missing
Ok thanks, i'll look at this ! Le lundi 10 mars 2014 11:51:22 UTC+1, Eduardo Pareja Tobes a écrit
3/10/14
Pablo Pareja Tobes
, …
Eduardo Pareja Tobes
6
3/6/14
Bio4j accepted for Google Summer of Code 2014
Hey Sandeep sure, we even thought about adding something like "integrate data resource xyz"
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Bio4j accepted for Google Summer of Code 2014
Hey Sandeep sure, we even thought about adding something like "integrate data resource xyz"
3/6/14
roald...@student.uclouvain.be
,
Pablo Pareja Tobes
7
3/3/14
Importation on windows
Hi Pablo, Thanks for this message. Any news about if it's ok right now? Best regards, Roald Le
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Importation on windows
Hi Pablo, Thanks for this message. Any news about if it's ok right now? Best regards, Roald Le
3/3/14
Dhiwakar N A
,
Pablo Pareja Tobes
2
3/2/14
AWS based projects
Hi Dhiwakar, Great to hear about your interest in Bio4j ;) I just had a quick look at the
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AWS based projects
Hi Dhiwakar, Great to hear about your interest in Bio4j ;) I just had a quick look at the
3/2/14
Pavan Kumar
,
Pablo Pareja Tobes
3
2/24/14
Proper link for downloading bio4j
Hi Pablo, Thanks for your reply. Could you brief about importing databases (Say KEGG) which is not
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Proper link for downloading bio4j
Hi Pablo, Thanks for your reply. Could you brief about importing databases (Say KEGG) which is not
2/24/14