Re: [bedtools-discuss] intersectBed mix position, name, score

[Chris Schudoma]

Sam,

you could use -wo and pipe the output to "cut -f
<indices-of-your-desired-fields>".

Best,
Christian

On 04.05.2013 23:11, all...@sas.upenn.edu wrote:
> I know intersectBed has -wa and -wb options that write the original
> entries for a.bed and b.bed respectively.
>
> However, is there a way for intersectBed to write the chromStart and
> chromEnd from a.bed and the name and score from b.bed into the same
> output?
>
> I realize this is an unusual request, so I appreciate the help.
> -Sam
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