No, I rarely get a "See agent", but what exactly is the cause your problem?
Maybe it's how you "swipe" your Clipper Card.
Don't know how you "swipe" your Clipper Card on BART's Clipper Card reader,
but I personally don't swipe my Clipper Card.
Instead, I touch (tag) the end of My Clipper Card (the end where the
triangles on the card point to) to any Clipper Card reader. I've found over
the years that this produces the best success rate.
I know other transit users lay their Clipper Card flat on the Clipper Card
reader, but in my experience it's not necessary to do so.
Are you actually swiping your Clipper Card across the Clipper Card readers?
If so, that very well could be the problem.
- Peter