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Tirza Doniger
2
11/4/15
bam files cannot be parsed
also- I tried it both on unix and one windows. It yields the same error. SAMMate-2.7.4 On Wednesday,
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bam files cannot be parsed
also- I tried it both on unix and one windows. It yields the same error. SAMMate-2.7.4 On Wednesday,
11/4/15
sunghee OH
,
Nan Deng
2
4/11/14
A quick question on SAMMate with reference genome and bam files
I think the chromosome name in your annotation file and in BAM file are not consistent. If your can
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A quick question on SAMMate with reference genome and bam files
I think the chromosome name in your annotation file and in BAM file are not consistent. If your can
4/11/14
Bo Zhu
, …
Tin Nguyen Chi
4
8/20/13
How to seperate the groupA and B in Linux
Thanks for you guys reply. It will be really cool to add this function like Trinity. Meanwhile, I am
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How to seperate the groupA and B in Linux
Thanks for you guys reply. It will be really cool to add this function like Trinity. Meanwhile, I am
8/20/13
sunghee OH
,
Tin Chi Nguyen
2
5/24/13
gtf file format
Hi, Can you give me more details please. What was your gtf file and what was your alignment file. If
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gtf file format
Hi, Can you give me more details please. What was your gtf file and what was your alignment file. If
5/24/13
Chi-Fu Chou
5/17/13
Questions about SAMMate and EdgeR
Thank you in advance for this convenient SAMMate. I am a novice to RNA-seq analysis. I tried to
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Questions about SAMMate and EdgeR
Thank you in advance for this convenient SAMMate. I am a novice to RNA-seq analysis. I tried to
5/17/13
Martin Abba
, …
Dongxiao Zhu
3
4/28/13
BAM file cannot be parsed
Thanks, Tin. I gave the metagenomics talk and it was great. Please keep working on the BCB paper, and
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BAM file cannot be parsed
Thanks, Tin. I gave the metagenomics talk and it was great. Please keep working on the BCB paper, and
4/28/13
Tin Chi Nguyen
3/12/13
Fwd: help
From: "Tin Chi Nguyen" <ex6...@wayne.edu> To: "Roberta Spinelli" <
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Fwd: help
From: "Tin Chi Nguyen" <ex6...@wayne.edu> To: "Roberta Spinelli" <
3/12/13
Tin Chi Nguyen
3
2/12/13
Re: Account to upload
Hi Behrooz, I think bowtie2 is able to align reads with gaps. However it cannot replace junction
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Re: Account to upload
Hi Behrooz, I think bowtie2 is able to align reads with gaps. However it cannot replace junction
2/12/13
behrooz darbani
,
Tin Chi Nguyen
2
2/5/13
SAMMATE: input format to get transcripts quantities, alignment possibility
Hi Behrooz, Currently SAMMate WinOS accepts both SAM and BAM files as inputs (not fasta files). If
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SAMMATE: input format to get transcripts quantities, alignment possibility
Hi Behrooz, Currently SAMMate WinOS accepts both SAM and BAM files as inputs (not fasta files). If
2/5/13
P M
,
Tin Chi Nguyen
2
1/9/13
Issue with alignment report
Hi, Can you provide more details on parameters used in SAMMate? I can debug it if you also provide
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Issue with alignment report
Hi, Can you provide more details on parameters used in SAMMate? I can debug it if you also provide
1/9/13
Tin Chi Nguyen
11/16/12
Re: help SAMMate2.7.4
Hi, The major difference is that the new SAMMate also process junction reads and paired-end reads.
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Re: help SAMMate2.7.4
Hi, The major difference is that the new SAMMate also process junction reads and paired-end reads.
11/16/12
Tin Nguyen Chi
2
8/27/12
aSAMMate website http://asammate.sourceforge.net
Hi, We have move the software SAMMate to the new website. It is maintained and continuously developed
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aSAMMate website http://asammate.sourceforge.net
Hi, We have move the software SAMMate to the new website. It is maintained and continuously developed
8/27/12
Tin Nguyen Chi
3
8/15/12
Fwd: The EdgeR can not be successfully executed due to no R exectuable file, no package 'edgeR' or no expressed transcripts.
I'm glad that it works for you. On Wed, Aug 15, 2012 at 3:56 PM, James Cai <jamescai@genomezoo
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Fwd: The EdgeR can not be successfully executed due to no R exectuable file, no package 'edgeR' or no expressed transcripts.
I'm glad that it works for you. On Wed, Aug 15, 2012 at 3:56 PM, James Cai <jamescai@genomezoo
8/15/12
Mengqing Xiang
, …
Dongxiao Zhu
8
6/26/12
SAMMate.app missing in SAMMate-2.7_mac download?
Hi Prof. Xiang, Just so you know that we have released SAMMate 2.7.1 with both Mac and Window
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SAMMate.app missing in SAMMate-2.7_mac download?
Hi Prof. Xiang, Just so you know that we have released SAMMate 2.7.1 with both Mac and Window
6/26/12
Tin Chi Nguyen
2
3/29/12
Re: SAMMate-2.7c fails; coverage.txt
Hi, I have fixed the bug. Please find the file SAMMate-2.7_win64.zip at http://www.cs.wayne.edu/
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Re: SAMMate-2.7c fails; coverage.txt
Hi, I have fixed the bug. Please find the file SAMMate-2.7_win64.zip at http://www.cs.wayne.edu/
3/29/12