AromaUnitTotalCnBinarySet$byName- Error in cdf[[1]] : subscript out of bounds

[ahke...@gmail.com]

Hi All,

    I was following the online viginette http://www.aroma-project.org/howtos/exportTotalCnRatioSet to export total Copy Number Ratios, i have ran CRMAv2 without problem, but when I try to do the following i got the error in cdf, anyone has similar experience to share?

Thanks
CK

> cdf <- AffymetrixCdfFile$byChipType("GenomeWideSNP_6")
> csR_CHI <- AffymetrixCelSet$byName("47Chinese_CEL", cdf=cdf)
> tags <- "ACC,ra,-XY,BPN,-XY,AVG,A+B,FLN,-XY" 
> chipType <- "GenomeWideSNP_6"
> ds_CHI <- AromaUnitTotalCnBinarySet$byName(csR_CHI, tags=tags, chipType=chipType)
Error in cdf[[1]] : subscript out of bounds

[Henrik Bengtsson]

Did you really mean to use object 'csR_CHI' in that last call, or did you mean:

ds_CHI <- AromaUnitTotalCnBinarySet$byName("47Chinese_CEL", tags=tags,
chipType=chipType)

?

Henrik

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