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EunCheon Lim
,
Dent Earl
4
7/4/16
Cannot run the basic flow in the homepage.
+benedict for reals this time On Monday, July 4, 2016 at 1:55:09 PM UTC-7, Dent Earl wrote: Hi
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Cannot run the basic flow in the homepage.
+benedict for reals this time On Monday, July 4, 2016 at 1:55:09 PM UTC-7, Dent Earl wrote: Hi
7/4/16
Dent Earl
10/1/14
Your funding text!
Hey everyone, I've received a number of emails in the past day from authors needing to update
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Your funding text!
Hey everyone, I've received a number of emails in the past day from authors needing to update
10/1/14
Dent Earl
, …
Brian Raney
3
9/30/14
Final Manuscript
omg.... it's the apocalypse! Congrats. On Tue, Sep 30, 2014 at 9:13 AM, Dent Earl <dent.earl@
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Final Manuscript
omg.... it's the apocalypse! Congrats. On Tue, Sep 30, 2014 at 9:13 AM, Dent Earl <dent.earl@
9/30/14
Benedict Paten
9/23/14
Fwd: Genome Research -- Manuscript Decision
Good news - looks like we have provisional (it's very wordy) acceptance of the Alignathon
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Fwd: Genome Research -- Manuscript Decision
Good news - looks like we have provisional (it's very wordy) acceptance of the Alignathon
9/23/14
Dent Earl
8/18/14
Revision sent out,
Hi all, Just wanted to let you know that we completed the revision for Genome Research, addressing
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Revision sent out,
Hi all, Just wanted to let you know that we completed the revision for Genome Research, addressing
8/18/14
Javier Herrero
7/4/14
Re: [alignathon:66] The Reviews have returned,
Dear Dent et al, Indeed, reviewer 2 is the more critical of the work. I also find very difficult to
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Re: [alignathon:66] The Reviews have returned,
Dear Dent et al, Indeed, reviewer 2 is the more critical of the work. I also find very difficult to
7/4/14
Dent Earl
6/27/14
The Reviews have returned,
Dear friends, We've finally received a decision from Genome Research: revise and resubmit. In
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The Reviews have returned,
Dear friends, We've finally received a decision from Genome Research: revise and resubmit. In
6/27/14
Dent Earl
6/23/14
The wait continues,
Dear friends, I'm writing to let you know that we are continuing to wait on Genome Research. We
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The wait continues,
Dear friends, I'm writing to let you know that we are continuing to wait on Genome Research. We
6/23/14
Dent Earl
,
Brian Raney
2
1/4/14
Alignathon Manuscript is available
!t00w On Sat, Jan 4, 2014 at 12:08 PM, Dent Earl <dent...@gmail.com> wrote: > Dear
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Alignathon Manuscript is available
!t00w On Sat, Jan 4, 2014 at 12:08 PM, Dent Earl <dent...@gmail.com> wrote: > Dear
1/4/14
Dent Earl
, …
Илья Минкин
9
10/7/13
Deadline nearing,
To Multiz & Cactus submissions authors: how much resources did it require you to compute the
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Deadline nearing,
To Multiz & Cactus submissions authors: how much resources did it require you to compute the
10/7/13
Javier Herrero
,
Dent Earl
2
5/7/13
Coverage of the simulated alignments
Hey Javier, Without looking at an exact example, I'm 99.9% sure your guess is correct. Evolver
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Coverage of the simulated alignments
Hey Javier, Without looking at an exact example, I'm 99.9% sure your guess is correct. Evolver
5/7/13
Dent Earl
, …
Benedict Paten
3
5/6/13
Update!
I agree it would be good to get these numbers brought together and out there. On Mon, May 6, 2013 at
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Update!
I agree it would be good to get these numbers brought together and out there. On Mon, May 6, 2013 at
5/6/13
Dent Earl
4/18/12
Status update, Collaborator Questionare,
Dear Alignathon collaborators, Analyses are running! I'm in the thick of moving all the
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Status update, Collaborator Questionare,
Dear Alignathon collaborators, Analyses are running! I'm in the thick of moving all the
4/18/12
Dent Earl
,
Carsten Kemena
3
2/7/12
New Flies Posted, deadline shifted
Hey Carsten, Yes, the value on the website (ffbd16a...3315) is correct, the script had an old value.
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New Flies Posted, deadline shifted
Hey Carsten, Yes, the value on the website (ffbd16a...3315) is correct, the script had an old value.
2/7/12
Javier Herrero
, …
Dent Earl
5
2/6/12
Missing annotations in simRat_chrR
Hey Carsten, You're right, the bed files on the website were wonky too. But no longer! Corrected
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Missing annotations in simRat_chrR
Hey Carsten, You're right, the bed files on the website were wonky too. But no longer! Corrected
2/6/12
Dent Earl
2/1/12
New Flies
Dear all, Since I haven't heard any complaining about the idea I assume everyone is onboard and I
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New Flies
Dear all, Since I haven't heard any complaining about the idea I assume everyone is onboard and I
2/1/12
Dent Earl
, …
Aaron Darling
5
1/26/12
Important! New data set opportunity, input requested
Hey Brian, I'm still working on getting the newick for this, but there is a species tree in the
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Important! New data set opportunity, input requested
Hey Brian, I'm still working on getting the newick for this, but there is a species tree in the
1/26/12
Javier Herrero
,
Dent Earl
7
1/19/12
Repeat annotation
Hey Javier, I added the gff annotations that evolver produces to each of the packages' page (http
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Repeat annotation
Hey Javier, I added the gff annotations that evolver produces to each of the packages' page (http
1/19/12
Dent Earl
1/19/12
Alignments with paralogous blocks stripped now available,
Dear all, Following this discussion in this thread (http://groups.google.com/ group/alignathon/
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Alignments with paralogous blocks stripped now available,
Dear all, Following this discussion in this thread (http://groups.google.com/ group/alignathon/
1/19/12
aarond...@ucdavis.edu
,
Dent Earl
8
1/12/12
Question on simulated MAF details
That sounds alright, though I'm not exactly sure what that scoring algorithm would look like...
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Question on simulated MAF details
That sounds alright, though I'm not exactly sure what that scoring algorithm would look like...
1/12/12
Dent Earl
1/9/12
Simulation recipes posted
Hi all, I just wanted to let the list know that I have posted the simulation parameters and infiles (
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Simulation recipes posted
Hi all, I just wanted to let the list know that I have posted the simulation parameters and infiles (
1/9/12
Dent Earl
1/5/12
True MAF Change, re-download required
Hi all, I just noticed that the incorrect versions of the "truth" mafs for simPrimates and
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True MAF Change, re-download required
Hi all, I just noticed that the incorrect versions of the "truth" mafs for simPrimates and
1/5/12
Aaron Darling
, …
Dent Earl
6
1/5/12
Alignathon evaluation
Hey Aaron (and Manfred), Thanks for the suggestion! I think this is a great idea and I would love to
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Alignathon evaluation
Hey Aaron (and Manfred), Thanks for the suggestion! I think this is a great idea and I would love to
1/5/12
Manfred Grabherr
,
Dent Earl
3
1/5/12
Multiple vs. all-to-all pairwise alignments
Hi Dent, Thank you for the clarification, this is very helpful! Cheers, - Manfred
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Multiple vs. all-to-all pairwise alignments
Hi Dent, Thank you for the clarification, this is very helpful! Cheers, - Manfred
1/5/12
Dent
1/4/12
Alignathon Reminder,
Dear Colleagues, Happy new year! I'm just writing to remind you of the Alignathon announcement
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Alignathon Reminder,
Dear Colleagues, Happy new year! I'm just writing to remind you of the Alignathon announcement
1/4/12
Ani
,
Dent
4
12/20/11
Tool set
Thanks Dent, sounds cool then. I will download the data and bug you again with more queries... Happy
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Tool set
Thanks Dent, sounds cool then. I will download the data and bug you again with more queries... Happy
12/20/11
Dent
12/20/11
Welcome (original text of announcement)
It's likely that everyone on the list at this early stage received this email from David, but for
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Welcome (original text of announcement)
It's likely that everyone on the list at this early stage received this email from David, but for
12/20/11