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Sam White
,
Damian
4
2/9/17
Changing Parameter File output has no effect (want QSpec output)
The manual is out of date. Changes and bug fixes to the program have been my focus since most user
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Changing Parameter File output has no effect (want QSpec output)
The manual is out of date. Changes and bug fixes to the program have been my focus since most user
2/9/17
Alexander Rabe
, …
Damian
6
1/29/17
Abacus stops loading prot.xml files
Glad to hear it. Just wanted to let you know that Abacus isn't multithread optimized so throwing
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Abacus stops loading prot.xml files
Glad to hear it. Just wanted to let you know that Abacus isn't multithread optimized so throwing
1/29/17
Jimmy
, …
dfermin
8
8/2/16
java.sql.SQLSyntaxErrorException when running NSAF
I got the IT dept. to update java and all is well now. Thanks for actively supporting your tool! On
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java.sql.SQLSyntaxErrorException when running NSAF
I got the IT dept. to update java and all is well now. Thanks for actively supporting your tool! On
8/2/16
maik_mu...@hotmail.com
, …
GATTACA
6
7/21/16
Abacus freezes at 70%
On Thursday, July 21, 2016 at 2:07:14 PM UTC-4, Vidya Venkatraman wrote: I have a follow-up question
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Abacus freezes at 70%
On Thursday, July 21, 2016 at 2:07:14 PM UTC-4, Vidya Venkatraman wrote: I have a follow-up question
7/21/16
Wallace Chan
, …
kswea...@systemsbiology.org
4
12/22/15
Abacus Freezing at 30%
I believe I have found the solution, so I wanted to post it here. I have been able to reproduce the
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Abacus Freezing at 30%
I believe I have found the solution, so I wanted to post it here. I have been able to reproduce the
12/22/15
Jimmy
,
Damian
9
9/9/15
run error
Thanks for debugging this Damian; I knew it had to be some stupid self-inflicted error like this. On
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run error
Thanks for debugging this Damian; I knew it had to be some stupid self-inflicted error like this. On
9/9/15
Lotta Happonen
,
Damian
3
6/16/15
Error running abacus
Hi Damian, thanks! I reanalyzed the data using another fasta-file, and now everything (abacus) worked
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Error running abacus
Hi Damian, thanks! I reanalyzed the data using another fasta-file, and now everything (abacus) worked
6/16/15
Jimmy
,
Damian
2
9/8/14
TOTNSAF, UNIQNSAF, ADJNSAF
Hi, TOTNSAF stand for NSAF computed using all of the spectral counts (the total) for a given protein.
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TOTNSAF, UNIQNSAF, ADJNSAF
Hi, TOTNSAF stand for NSAF computed using all of the spectral counts (the total) for a given protein.
9/8/14
Rachel Li
4/21/14
problem downloading Abacus
Hi damain, I cant download a few Abacus files from this link recently, http://sourceforge.net/
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problem downloading Abacus
Hi damain, I cant download a few Abacus files from this link recently, http://sourceforge.net/
4/21/14
maryamafkarian
,
Damian
5
3/29/14
group spectral counts in Abacus
thank you. On Thursday, March 27, 2014 10:03:43 PM UTC-7, maryamafkarian wrote: Hi, I recently used
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group spectral counts in Abacus
thank you. On Thursday, March 27, 2014 10:03:43 PM UTC-7, maryamafkarian wrote: Hi, I recently used
3/29/14
eileen...@gmail.com
,
Damian
2
12/12/13
abacus output query
Hi Yee, This really depends upon the amount of data you have and your intended usage of the Abacus
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abacus output query
Hi Yee, This really depends upon the amount of data you have and your intended usage of the Abacus
12/12/13
srihari sharma
,
Damian
7
12/6/13
Abacus query
Hello Damian, Thanks a lot for your reply. I will go back to my original files and rerun them and
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Abacus query
Hello Damian, Thanks a lot for your reply. I will go back to my original files and rerun them and
12/6/13
David Gemperline
, …
dfermin
12
11/29/13
Help Running ABACUS
Hi. Thanks for the offer! This would be great! To run Abacus you need to combine the all of the
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Help Running ABACUS
Hi. Thanks for the offer! This would be great! To run Abacus you need to combine the all of the
11/29/13
Venugopal M R
,
dfermin
2
11/4/13
Help in getting started..
Hello. There are a few places to start. The first would be the Abacus Manual available for download
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Help in getting started..
Hello. There are a few places to start. The first would be the Abacus Manual available for download
11/4/13
Linda Switzar
,
dfermin
3
10/18/13
Abacus error, freezes at 20% progress
Hello Damian, Thanks for your swift reply! when I ran Abacus from the command prompt, there was no
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Abacus error, freezes at 20% progress
Hello Damian, Thanks for your swift reply! when I ran Abacus from the command prompt, there was no
10/18/13
Brandon
2
1/29/13
How to view data
Nevermind. I answered my own question On Tuesday, January 29, 2013 4:22:58 PM UTC-6, Brandon wrote:
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How to view data
Nevermind. I answered my own question On Tuesday, January 29, 2013 4:22:58 PM UTC-6, Brandon wrote:
1/29/13
Jimmy
,
Damian
2
1/28/13
Abacus error
Hi. Sorry to here you are having a problem with Abacus. First off, the command line just has to be:
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Abacus error
Hi. Sorry to here you are having a problem with Abacus. First off, the command line just has to be:
1/28/13
Brett Phinney
,
Damian
3
1/18/13
gene map file
I'll give that a shot...Sorry Tair is a arabidopsis database. Most of the arabidopsis folks
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gene map file
I'll give that a shot...Sorry Tair is a arabidopsis database. Most of the arabidopsis folks
1/18/13
Lindsay
,
dfermin
13
10/30/12
ABACUS stuck at " Creating combined table from 'interact-ALL.prot.xml'"
Hi Damian, Thanks for your clear explanation, I think I understand that option much better now. In
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ABACUS stuck at " Creating combined table from 'interact-ALL.prot.xml'"
Hi Damian, Thanks for your clear explanation, I think I understand that option much better now. In
10/30/12
Simon
, …
Damian
4
1/5/12
Data File size limit is reached
Glad to hear it. Let me know if you have any further issues. Damian ---------------------------------
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Data File size limit is reached
Glad to hear it. Let me know if you have any further issues. Damian ---------------------------------
1/5/12
Ivo Chamrád
,
GATTACA
12
10/27/11
Abacus get stuck when retrieving protein lengths
Hi guys, I have just found out that we did not post any final comment about our problem. So, as
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Abacus get stuck when retrieving protein lengths
Hi guys, I have just found out that we did not post any final comment about our problem. So, as
10/27/11
rsturm
,
GATTACA
4
9/21/11
abacus geneID protein matching and NUMXML function
Hi. Abacus has been updated to handle the default swissprot/uniprot fasta headers. I've also
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abacus geneID protein matching and NUMXML function
Hi. Abacus has been updated to handle the default swissprot/uniprot fasta headers. I've also
9/21/11
rsturm
,
GATTACA
3
9/20/11
genemapper query wrt swissprot IDs
Damian, the new version worked great thanks! Rob On Sep 20, 9:40 am, GATTACA <dfer...@umich.edu
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genemapper query wrt swissprot IDs
Damian, the new version worked great thanks! Rob On Sep 20, 9:40 am, GATTACA <dfer...@umich.edu
9/20/11
钟传奇
,
GATTACA
4
8/28/11
Abacus stopped at 80%
The latest version of Abacus do work with my files. Thanks very much. On Fri, Aug 26, 2011 at 12:15
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Abacus stopped at 80%
The latest version of Abacus do work with my files. Thanks very much. On Fri, Aug 26, 2011 at 12:15
8/28/11
walm...@comcast.net
,
Damian Fermin
3
8/18/11
error on running abacus
Problem solved. I needed to press 'clear form' and then reload the data for analysis, that
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error on running abacus
Problem solved. I needed to press 'clear form' and then reload the data for analysis, that
8/18/11
swalmsle
,
GATTACA
2
5/17/11
abacus and normalization
I'm not quite sure what you are comparing Abacus to. I would guess that the more replicates you
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abacus and normalization
I'm not quite sure what you are comparing Abacus to. I would guess that the more replicates you
5/17/11