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Biodiverse Users

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Discussion group for support and announcements for users of the Biodiverse spatial analysis software.
To download the software itself, see links at https://shawnlaffan.github.io/biodiverse/

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Sep 2

Biodiverse 4.99_010 development release is now available

The Mac version has now been verified to work on other machines and so is now available. https://

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Biodiverse 4.99_010 development release is now available

The Mac version has now been verified to work on other machines and so is now available. https://

Sep 2

Shahab Ali, Shawn Laffan2

Sep 1

Issue with Clustering of Grids in Biodiverse after Phylogenetic Turnover Analysis

Hello Shahab, Which version of Biodiverse are you using? In any case, I suspect it is due to the way

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Issue with Clustering of Grids in Biodiverse after Phylogenetic Turnover Analysis

Hello Shahab, Which version of Biodiverse are you using? In any case, I suspect it is due to the way

Sep 1

Saddam Saqib, Shawn Laffan2

Jul 6

About export CANAPE randomisation results

Hello Saddam, The randomisation results are stored under each of the analysis outputs. More details

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About export CANAPE randomisation results

Hello Saddam, The randomisation results are stored under each of the analysis outputs. More details

Jul 6

Shawn Laffan, Bobur Karimov3

Apr 23

changes to biodiverse-users google group settings

If you control-click on a map cell or tree branch then a pop-up window shows the labels (species)

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changes to biodiverse-users google group settings

If you control-click on a map cell or tree branch then a pop-up window shows the labels (species)

Apr 23

Apr 8

-- Marco Iocchi

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-- Marco Iocchi

Apr 8

Claire de Walque, Shawn Laffan3

Mar 5

I've now packed a new version of 4.3 for Macs with an ARM chip. Can people please test it can

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I've now packed a new version of 4.3 for Macs with an ARM chip. Can people please test it can

Mar 5

Claire de Walque, Shawn Laffan2

Feb 25

coordinates columns

Hello Claire, Biodiverse will import polygons (once I fix the proj.db error you reported). Some of

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coordinates columns

Hello Claire, Biodiverse will import polygons (once I fix the proj.db error you reported). Some of

Feb 25

Rafael Becker, Shawn Laffan2

Jan 19

Hello Rafael, Apologies for the slow response. Matrices such as for genetic similarity are usually

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Hello Rafael, Apologies for the slow response. Matrices such as for genetic similarity are usually

Jan 19

Roni Fernando Gomez Martinez, Shawn Laffan2

5/19/24

Hello Roni, Currently the system can delete whole groups or labels. It cannot delete a subset of

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Hello Roni, Currently the system can delete whole groups or labels. It cannot delete a subset of

5/19/24

Gilbert Alarcon-Cruz, Shawn Laffan2

5/5/24

Save spatial analysis results as image

Hello Gilbert, Yes, this is possible. You can export the displayed data to an RGBA GeoTIFF file. They

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Save spatial analysis results as image

Hello Gilbert, Yes, this is possible. You can export the displayed data to an RGBA GeoTIFF file. They

5/5/24

Şükran Şahin, Shawn Laffan2

4/16/24

Is it possible to find out a training video for Biodiverse tool?

Hello Şükran, Training videos would be very useful. We don't have any at the moment, but if you

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Is it possible to find out a training video for Biodiverse tool?

Hello Şükran, Training videos would be very useful. We don't have any at the moment, but if you

4/16/24

Gilbert Alarcon-Cruz, Shawn Laffan2

3/27/24

rarefaction analysis/curve

Hello Gilbert, Biodiverse does not yet do rarefaction, although it can be added. It does support

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rarefaction analysis/curve

Hello Gilbert, Biodiverse does not yet do rarefaction, although it can be added. It does support

3/27/24

Editor PDCA, Shawn Laffan4

3/20/24

Hello Sergei, Good to hear it works. The requirement is noted in the blog, although it could perhaps

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Hello Sergei, Good to hear it works. The requirement is noted in the blog, although it could perhaps

3/20/24

Wang, Shawn Laffan7

11/26/23

About calculating the p value of PD and PE

Hello Shawn, I'm sorry that I couldn't find an effective way to add the Super class. I may be

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About calculating the p value of PD and PE

Hello Shawn, I'm sorry that I couldn't find an effective way to add the Super class. I may be

11/26/23

Wang, Shawn Laffan3

11/11/23

Some questions about grid discontinuities

Hello,Shawn I am still very confused about this question. Please help me look at my data and I will

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Some questions about grid discontinuities

Hello,Shawn I am still very confused about this question. Please help me look at my data and I will

11/11/23

Wang, Shawn Laffan10

11/9/23

Some questions about phylogenetic diversity

At the moment this cannot be done. The visualisations in Biodiverse are relatively simple and are

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Some questions about phylogenetic diversity

At the moment this cannot be done. The visualisations in Biodiverse are relatively simple and are

11/9/23

Mark Dong, Shawn Laffan8

10/11/23

some problem about analysis

Hello Mark, This is one of those questions to which there is no simple answer. In an ideal world we

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some problem about analysis

Hello Mark, This is one of those questions to which there is no simple answer. In an ideal world we

10/11/23

Mark Dong, Shawn Laffan4

9/7/23

Puzzle about Biodiverse.Quick.Start.Guide.v4

(Adding the list back in to the thread). Good to hear it is solved. Please do post more questions.

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Puzzle about Biodiverse.Quick.Start.Guide.v4

(Adding the list back in to the thread). Good to hear it is solved. Please do post more questions.

9/7/23

Editor PDCA, Shawn Laffan3

7/17/23

PD based on branch length back to the last shared ancestor

The issue occurs when the analysis works on a group that has no labels on the tree. I have a fix that

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PD based on branch length back to the last shared ancestor

The issue occurs when the analysis works on a group that has no labels on the tree. I have a fix that

7/17/23

Alice Wilson, Shawn Laffan4

6/21/23

upside down map

Good to hear it works. Regards, Shawn. On 21/06/2023 20:16, Alice Wilson wrote: That was it - wrong

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upside down map

Good to hear it works. Regards, Shawn. On 21/06/2023 20:16, Alice Wilson wrote: That was it - wrong

6/21/23

João Afonso Poester, Shawn Laffan8

6/5/23

Hello João, I have attached a slide which has the formula with some annotations. Hopefully it is

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Hello João, I have attached a slide which has the formula with some annotations. Hopefully it is

6/5/23

Daniela Franco, Shawn Laffan3

5/14/23

.NEX UPLOAD DATA

Hello Shawn. Thanks for your response! I will read the link. Best, Daniela. On Sunday, May 14, 2023

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.NEX UPLOAD DATA

Hello Shawn. Thanks for your response! I will read the link. Best, Daniela. On Sunday, May 14, 2023

5/14/23

4/27/23

Biodiverse version 4.2 has now been released

Biodiverse version 4.3 has now been released. Versions for Windows, Mac and Linux (Ubuntu) are

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Biodiverse version 4.2 has now been released

Biodiverse version 4.3 has now been released. Versions for Windows, Mac and Linux (Ubuntu) are

4/27/23

Shawn Laffan, Gafarou AGOUNDE11

4/6/23

Biodiverse version 4.2 has been released

Hello Gafarou, The project needs a basedata to be already loaded before you can attach group or label

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Biodiverse version 4.2 has been released

Hello Gafarou, The project needs a basedata to be already loaded before you can attach group or label

4/6/23

4/5/23

The Quick Start Guide has now been updated

It has been a long time coming but the Biodiverse Quick Start Guide has now been updated and a new

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The Quick Start Guide has now been updated

It has been a long time coming but the Biodiverse Quick Start Guide has now been updated and a new

4/5/23

Gabriela Procópio Camacho, Shawn Laffan2

4/4/23

Question on Turnover analysis

Hello Gabri, A good question. I have a few comments/responses and requests for clarification. Could

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Question on Turnover analysis

Hello Gabri, A good question. I have a few comments/responses and requests for clarification. Could

4/4/23

Gabriela Procópio Camacho, Shawn Laffan3

3/16/23

Cluster analysis to define biogeographical region

Hello Gabriela, Sorry for the slow response. The answers all depend on the research question you are

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Cluster analysis to define biogeographical region

Hello Gabriela, Sorry for the slow response. The answers all depend on the research question you are

3/16/23

Shawn Laffan, Susana Gabriela Revollo Cadima7

2/26/23

Biodiverse version 4.1 released

So what you want is the subtree for a cell? There is no tool that will give you a nexus file, for

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Biodiverse version 4.1 released

So what you want is the subtree for a cell? There is no tool that will give you a nexus file, for

2/26/23

Gilbert Alarcon-Cruz, Shawn Laffan10

12/4/22

You're welcome. Regards, Shawn. On 5/12/2022 13:51, 'Gilbert Alarcon-Cruz' via Biodiverse

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You're welcome. Regards, Shawn. On 5/12/2022 13:51, 'Gilbert Alarcon-Cruz' via Biodiverse

12/4/22

11/27/22

Biodiverse version 4.0 has been released

Biodiverse Version 4 has now been released. Executables/binaries are available for Windows, Macintosh

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Biodiverse version 4.0 has been released

Biodiverse Version 4 has now been released. Executables/binaries are available for Windows, Macintosh

11/27/22

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