Discussions - BioPAX-Boston

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	William Hayes is on vacation
	I will be out of the office starting 08/21/2009 and will not return until 08/31/2009. Please contact library.h...@biogenidec.com or call 617-679-3006 for urgent Library requests. For Library services - please email 'Library.h...@biogenidec.com' or call +1-617-679-3006 By William Hayes - Aug 22 - 1 new of 1 message

	Meeting today
	Dear friends, Where are we meeting today? Same room as last time? Anything particular on the agenda? Take care Oliver By Oliver Ruebenacker - Oct 30 2007 - 5 new of 5 messages

	SPARQL Query Over Distributed Heterogeneous Data - INVITATION TO PRODUCT LAUNCH
	Hi all I believe some of you participating here will be interested in this.. The Semantic Discovery System V7 Releases 0 & 1 Providing Optimally Performing SPARQL Access Over Multiple Distributed And Heterogeneous Data Sources A web based copy of the intro email I would send is here: [link]... more » By igoldsmid - Oct 24 2007 - 1 new of 1 message

Unifying KEGG and BioCyc with InChI's

Hey Michel, ... I am inspired by your enthusiasm, and I think that unifying KEGG and BioCyc compounds would be an excellent use case for us, enabling real data integration to motivate our BioPAX representation. I spoke with Peter Karp about this possibility on Friday, and I will be at SRI on Thursday where we can discuss this further. He may be able to provide... more »

By zuc...@research.dfci.harvard.edu - Oct 15 2007 - 2 new of 2 messages

BioPAX-Boston meeting Wed 17 October 2007

Wednesday, 3-5. Agenda: More about how one would recast BioPAX using the methods of the OBO Foundry. We'll be in Stata 346 this time. Why the change? Because it's closer to my office than our room last week. Location is directly below last week's room: 3rd floor, Gates (i.e. east/Main St) tower. From the elevator go right, through doors, left,... more »

By jonathan.rees@gmail.com - Oct 15 2007 - 1 new of 1 message

What BioPAX communicates and how to extend OWL to help it (was: BioPAX Boston meeting, 11 October 2007)

Dear friends, I think the paper accurately describes the tensions surrounding BioPAX and I like the proposals to extend OWL with one caveat: I would not propose them as extensions of OWL, but as a separate layer. The extensions are very useful and easily implemented in principle, but deeply clash with OWL principles. As the authors understand, they... more »

By Oliver Ruebenacker - Oct 12 2007 - 1 new of 1 message

meeting today

Hey, Thanks for the great discussion guys - I've been digesting the class proposal (all reactions are classes with restrictions on their participants - and if these are asserted as an equivalentClass, then we can classify the reactions from different databases) over the last hour and half, and i definitely see merit in pursuing that. I think the big challenge is whether... more »

By Michel Dumontier - Oct 11 2007 - 6 new of 6 messages

	Systems Biology Theory lunch seminar: Towards knowledge-based semantic integration of models
	folks Thought you might be interested... [link] see you there. best, j. 12 Oct 2007 Carolyn Talcott Computer Science Lab SRI International Abstract In spite of standards efforts such as SMBL and BioPax it remains difficult to share models of biological processes (for example signal transduction... more » By zuc...@research.dfci.harvard.edu - Oct 11 2007 - 1 new of 1 message