Java Information Dynamics Toolkit (JIDT) discussion

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Hello and welcome to jidt-discuss, the mailing list for announcements and discussion regarding JIDT (the Java Information Dynamics Toolkit) -- http://code.google.com/p/information-dynamics-toolkit/

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Joe Lizier,
August 2014.

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Oswald Berthold

Feb 6

multivariate MI for under-determined data

Dear group, does anyone know (something about) what is the behavior of continuous MutualInfo

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multivariate MI for under-determined data

Dear group, does anyone know (something about) what is the behavior of continuous MutualInfo

Feb 6

Thomas Varley, Joseph Lizier3

10/29/23

Cannot load numpy data into Kraskov O-Information Estimator

Thanks Joe. All the best ~Thomas On 10/27/23 21:56, Joseph Lizier wrote: This message was sent from a

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Cannot load numpy data into Kraskov O-Information Estimator

Thanks Joe. All the best ~Thomas On 10/27/23 21:56, Joseph Lizier wrote: This message was sent from a

10/29/23

nahuel armando moreno perez, Joseph Lizier2

9/6/23

Symbolic Transfer Entropy

Hi Nahuel, To report a problem / request help properly, I need you to be a bit more specific. Can you

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Symbolic Transfer Entropy

Hi Nahuel, To report a problem / request help properly, I need you to be a bit more specific. Can you

9/6/23

elnaz moghaddam, Joseph Lizier2

1/16/23

Binning in JIDT

Dear Elnaz, If you ask for the binned estimator using the AutoAnalyser, the call to MatrixUtils.

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Binning in JIDT

Dear Elnaz, If you ask for the binned estimator using the AutoAnalyser, the call to MatrixUtils.

1/16/23

Mohammad Samsuzzaman, Joseph Lizier2

10/13/22

GPU for Flocking/swarming transfer entropy scripts

Dear Mohammad, I'm sorry that I missed your question. In the Flocking demo, you are able to set

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GPU for Flocking/swarming transfer entropy scripts

Dear Mohammad, I'm sorry that I missed your question. In the Flocking demo, you are able to set

10/13/22

Abolfazl Ziaeemehr, … Joseph Lizier3

10/8/22

negative value for Transfer entropy

Thanks Thomas. Yes, I presume the negative values come from using the KSG estimator. Please see the

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negative value for Transfer entropy

Thanks Thomas. Yes, I presume the negative values come from using the KSG estimator. Please see the

10/8/22

Giulio Vicentini, Joseph Lizier2

9/20/22

Collective Transfer Entropy

Hi Giuiio, I've not incorporated this into the AutoAnalyser yet, so it's not as

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Collective Transfer Entropy

Hi Giuiio, I've not incorporated this into the AutoAnalyser yet, so it's not as

9/20/22

9/5/22

New release v1.6

Hello JIDT followers, Am writing to announce the new v1.6 release of JIDT - see https://github.com/

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New release v1.6

Hello JIDT followers, Am writing to announce the new v1.6 release of JIDT - see https://github.com/

9/5/22

Bowen Zheng, Joseph Lizier6

8/8/22

Turn off Bias Correctioin?

The KSG estimator should converge, since it's mathematically proven to be a consistent estimator.

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Turn off Bias Correctioin?

The KSG estimator should converge, since it's mathematically proven to be a consistent estimator.

8/8/22

Martin Frasch, … Martin Frasch5

6/19/22

JIDT as docker image?

Hi Simon, That would be great. Let me know, please, if you got the docker working and on dockerhub.

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JIDT as docker image?

Hi Simon, That would be great. Let me know, please, if you got the docker working and on dockerhub.

6/19/22

Mohammad Samsuzzaman, Joseph Lizier2

3/30/22

Does the localTranEntropy file refers to the time series and per particle values of local transfer entropy

Hi Mohammad, 1. localTranEntropy is a variable in the results file, not a file itself. I've added

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Does the localTranEntropy file refers to the time series and per particle values of local transfer entropy

Hi Mohammad, 1. localTranEntropy is a variable in the results file, not a file itself. I've added

3/30/22

semei coronado, Joseph Lizier2

3/28/22

Problems with startJVM using JDIT Toolkit

Hi, A tip for future posts - "I have a problem with this" isn't a very useful request

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Problems with startJVM using JDIT Toolkit

Hi, A tip for future posts - "I have a problem with this" isn't a very useful request

3/28/22

Aleksander Janczewski

2/4/22

Noise overwhelming the Transfer Entropy estimates - Kraskov Algorithm1

Dear Professor Lizier, Thank you very much for all of your suggestions in the previous threads. I

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Noise overwhelming the Transfer Entropy estimates - Kraskov Algorithm1

Dear Professor Lizier, Thank you very much for all of your suggestions in the previous threads. I

2/4/22

Aleksander Janczewski, Joseph Lizier2

2/1/22

Ragwitz auto-embedding in Conditional Transfer Entropy

Dear Aleksander, In short yes you can and should use (some of) the parameters you've previously

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Ragwitz auto-embedding in Conditional Transfer Entropy

Dear Aleksander, In short yes you can and should use (some of) the parameters you've previously

2/1/22

Joseph Lizier, Aleksander Janczewski2

2/1/22

Re: [jidt-discuss] How does auto Embedding "Ragwitz" works?

Dear Professor Lizier, Thank you very much for your prompt response. Your remark actually helped me

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Re: [jidt-discuss] How does auto Embedding "Ragwitz" works?

Dear Professor Lizier, Thank you very much for your prompt response. Your remark actually helped me

2/1/22

2/1/22

[attn Pedro]: JIDT GPU

Hi Pedro, Joe advised that you might be the person to speak to about issues using JIDT GPU

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[attn Pedro]: JIDT GPU

Hi Pedro, Joe advised that you might be the person to speak to about issues using JIDT GPU

2/1/22

Splish Splash, Joseph Lizier2

5/12/21

Results Normalization

Hi Douglas - your same question on the IDTxl list has now been answered there, so I refer anyone

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Results Normalization

Hi Douglas - your same question on the IDTxl list has now been answered there, so I refer anyone

5/12/21

Martin Monperrus, … Joseph Lizier9

3/21/21

Transfer Entropy and Decision Procedures

Thanks for the detailed info Josh and the nice comments on the documentation! I didn't know you

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Transfer Entropy and Decision Procedures

Thanks for the detailed info Josh and the nice comments on the documentation! I didn't know you

3/21/21

Lukas Paulun, Joseph Lizier2

2/24/21

Auto-embedding on data with missing values?

Hi Lukas, Again, apologies for the late responses here. In short, your intuition is good that using

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Auto-embedding on data with missing values?

Hi Lukas, Again, apologies for the late responses here. In short, your intuition is good that using

2/24/21

2/19/21

Auto-embedding for AIS varies greatly between Ragwitz and maximum bias-corrected AIS

Hi there, I am currently trying to determine the optimal embedding parameters for computation of AIS

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Auto-embedding for AIS varies greatly between Ragwitz and maximum bias-corrected AIS

Hi there, I am currently trying to determine the optimal embedding parameters for computation of AIS

2/19/21

AmirHossein Hassanzadeh

2/14/21

TE in complex systems close to transition

Hello, I've been recently trying to reproduce the results of the following article with JIDT:

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TE in complex systems close to transition

Hello, I've been recently trying to reproduce the results of the following article with JIDT:

2/14/21

Abolfazl Ziaeemehr, Joseph Lizier2

1/1/21

about NOISE_LEVEL_TO_ADD

Dear Zaiee, Please see this FAQ -- https://github.com/jlizier/jidt/wiki/FAQs#can-the-kraskov-

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about NOISE_LEVEL_TO_ADD

Dear Zaiee, Please see this FAQ -- https://github.com/jlizier/jidt/wiki/FAQs#can-the-kraskov-

1/1/21

cms, Joseph Lizier2

12/10/20

calculate TE from 2D pose

Hello, Answers are inline below --joe On Fri, 11 Dec 2020 at 09:17, 'cms' via Java

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calculate TE from 2D pose

Hello, Answers are inline below --joe On Fri, 11 Dec 2020 at 09:17, 'cms' via Java

12/10/20

Abolfazl Ziaeemehr2

11/4/20

recovering the delay

I used the simulation data in TRENTOOL package that implemented this example, here (https://github.

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recovering the delay

I used the simulation data in TRENTOOL package that implemented this example, here (https://github.

11/4/20

F Sahl, Joseph Lizier3

10/8/20

Result 'infinity' for gaussian estimator

Hello Joe, thank you for your quick response! I'll have another look at the data and think about

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Result 'infinity' for gaussian estimator

Hello Joe, thank you for your quick response! I'll have another look at the data and think about

10/8/20

Ronaldo Nunes, Joseph Lizier3

10/2/20

Conditionals in AutoAnalyzer

Thanks Joe Best, Ronaldo On Fri, Oct 2, 2020 at 11:58 AM Joseph Lizier <joseph...@gmail.com

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Conditionals in AutoAnalyzer

Thanks Joe Best, Ronaldo On Fri, Oct 2, 2020 at 11:58 AM Joseph Lizier <joseph...@gmail.com

10/2/20

Katja Sangati, Joseph Lizier2

9/28/20

Transfer entropy normalization

Hi Katja, The discussion you point to lays out the theoretical considerations quite well,

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Transfer entropy normalization

Hi Katja, The discussion you point to lays out the theoretical considerations quite well,

9/28/20

Ronaldo Nunes, Joseph Lizier3

9/23/20

Multivariate Conditional TE

Hi Joe Thank you very much for the suggestions. Indeed, I considered IDTxl but I would like to verify

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Multivariate Conditional TE

Hi Joe Thank you very much for the suggestions. Indeed, I considered IDTxl but I would like to verify

9/23/20

Subhradeep Roy, … Federico Sangati6

9/21/20

Transfer entropy returning slightly different values in each run

Hi How, Thanks for the prompt reply. I misread the sentence (the outside helped a lot!), it makes lot

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Transfer entropy returning slightly different values in each run

Hi How, Thanks for the prompt reply. I misread the sentence (the outside helped a lot!), it makes lot

9/21/20

humai...@gmail.com, Joseph Lizier2

9/18/20

Analysis conditional and pairwise

Hi Humair, I presume you're looking at transfer entropies from the notation. What is it that you

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Analysis conditional and pairwise

Hi Humair, I presume you're looking at transfer entropies from the notation. What is it that you

9/18/20

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