Hello Fei,
Thank you for your question about visualizing Multiz alignments. We
recommend using the UCSC Genome Browser to visualize your
alignments. If you have your alignments in MAF format, and we host
the assembly used for the alignment, you can upload these alignments
as a custom track. For more information on the MAF format, refer to
the following help page:
http://genome.ucsc.edu/FAQ/FAQformat.html#format5. More information
on uploading custom tracks can be found here:
http://genome.ucsc.edu/goldenPath/help/customTrack.html.
I hope this is helpful. If you have any further questions, please
reply to
gen...@soe.ucsc.edu. All messages sent to that address are
archived on a publicly-accessible Google Groups forum. If your
question includes sensitive data, you may send it instead to
genom...@soe.ucsc.edu.
Matthew Speir
UCSC Genome Bioinformatics Group