registering a track hub with UCSC
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LaDeana Hillier
Feb 9, 2015, 12:13:12 PM2/9/15
to gen...@soe.ucsc.edu, LaDeana Hillier
Greetings -
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We have a C. elegans CB4856 genome assembly (another strain of C. elegans) we have been
analyzing. We are wondering if we could register a track hub with you for that assembly?
Go to: http://genome.ucsc.edu/cgi-bin/hgHubConnect
Click on My Hubs and under URL, enter: http://waterston.gs.washington.edu/trackhubs/isolates/hub.txt
and hit return.
The hub gives access to three assemblies:
1) CB4856 Princeton Contig-integrated Cycle 20 (the CB4856 reference)
2) CB4856 Princeton Recursive Cycle 20 (the intermediate version before integration of the JR contigs)
3) JR-Assembler contigs with aligned reads from the RILs and ILs
Click on My Hubs and under URL, enter: http://waterston.gs.washington.edu/trackhubs/isolates/hub.txt
and hit return.
The hub gives access to three assemblies:
1) CB4856 Princeton Contig-integrated Cycle 20 (the CB4856 reference)
2) CB4856 Princeton Recursive Cycle 20 (the intermediate version before integration of the JR contigs)
3) JR-Assembler contigs with aligned reads from the RILs and ILs
I can provide more details of course if you like.
With appreciation,
LaDeana Hillier
____ This email message is a private communication. The information transmitted, including attachments, is intended only for the person or entity to which it is addressed and may contain confidential, privileged, and/or proprietary material. Any review, duplication, retransmission, distribution, or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipient is unauthorized by the sender and is prohibited. If you have received this message in error, please contact the sender immediately by return email and delete the original message from all computer systems. Thank you.
Matthew Speir
Feb 10, 2015, 3:19:53 PM2/10/15
to LaDeana Hillier, gen...@soe.ucsc.edu
Hi LaDeana,
Thank you for making this data available! I will be the QA engineer tasked with reviewing your assembly hub and later adding it to the list of publicly available hubs. If you haven't already, you may also find it helpful to read our list of track hub guidelines at http://genomewiki.ucsc.edu/index.php/Public_Hub_Guidelines. It contains a list of common suggestions and requests that we make of hub providers before adding their data to the list. At minimum, we request that each track have a description page with contact information (usually an email address). Feel free to send us additional questions should you have them as you work through those guidelines. I will also review your hub and send along some suggested improvements.
I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.
Matthew Speir
UCSC Genome Bioinformatics Group
Thank you for making this data available! I will be the QA engineer tasked with reviewing your assembly hub and later adding it to the list of publicly available hubs. If you haven't already, you may also find it helpful to read our list of track hub guidelines at http://genomewiki.ucsc.edu/index.php/Public_Hub_Guidelines. It contains a list of common suggestions and requests that we make of hub providers before adding their data to the list. At minimum, we request that each track have a description page with contact information (usually an email address). Feel free to send us additional questions should you have them as you work through those guidelines. I will also review your hub and send along some suggested improvements.
I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.
Matthew Speir
UCSC Genome Bioinformatics Group
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