axtChain- problem
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lenis vasilis
Jan 27, 2014, 11:20:25 AM1/27/14
to gen...@soe.ucsc.edu
Hello everybody,
I'm trying to generates the chains & nets from an alignment file (chr1 from chicken as the target and the genome of Zebra finch as the query) and it gives me the following error:
951 blocks after duplicate removal
Loaded 72861351 bases from chrZ fa
Loaded 195276750 bases from chr1 fa
chainPair chrZ-chr1
query chrZ block 73188236-73188393 exceeds sequence length 72861351
Is there anyone who could help me with that?
Thank you very much in advance,
Vasilis.
I'm trying to generates the chains & nets from an alignment file (chr1 from chicken as the target and the genome of Zebra finch as the query) and it gives me the following error:
951 blocks after duplicate removal
Loaded 72861351 bases from chrZ fa
Loaded 195276750 bases from chr1 fa
chainPair chrZ-chr1
query chrZ block 73188236-73188393 exceeds sequence length 72861351
Is there anyone who could help me with that?
Thank you very much in advance,
Vasilis.
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