canFam3 SNPs

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Mehar

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Apr 25, 2013, 4:05:18 PM4/25/13

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Hi,

I am in need of known SNPs file for canFam3 build and I am regularly looking at the link
http://hgdownload.soe.ucsc.edu/goldenPath/canFam3/database/ since 2011 september, to download the known SNPs file. Unfortunately, it was not available in the canFam3 annotation database.

Could someone help to provide the SNP file for canFam3?

Thanks in advance.

Regards
Mehar

Pauline Fujita

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Apr 26, 2013, 2:56:05 PM4/26/13

to Mehar, UCSC Genome Browser discussion list

Hello Mehar,

We do hope to eventually display this data however the most recent set of SNPs available in dbSNP is that for canFam2. The data for canFam2 can be downloaded here (as you probably already know):

http://hgdownload.soe.ucsc.edu/goldenPath/canFam2/database/

Sorry we can't be of more help at this time.

Best regards,

Pauline Fujita
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu