How can I download common SNPs for dbSNP build 137?

106 views
Skip to first unread message

Natalia Rodchenko

unread,
May 26, 2015, 11:19:25 AM5/26/15
to gen...@soe.ucsc.edu
Hello,

I need to download the set of Common SNPs from dbSNP build 137,

I have found this link:
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/

but it only contains the file:
snp138Common.txt.gz
for the build 138.

Please let me know how can I get the same file, but for build 137,
thank you, Natalia


--
Natalia Rodchenko, PhD student
Computational biology and bioinformatics,
University of Southern California,
Office: RRI316C

Jonathan Casper

unread,
May 29, 2015, 6:09:50 PM5/29/15
to Natalia Rodchenko, gen...@soe.ucsc.edu

Hello Natalia,

Thank you for your question about obtaining data from the build 137 release of dbSNP. We retired our display of SNP 137 data as part of the release of SNP 142, so it is no longer available from our download server. I was able to prepare a temporary download file for you at http://genome-test.soe.ucsc.edu/~jcasper/snp137/snp137Common.txt.gz.

I hope this is helpful. If you have any further questions, please reply to gen...@soe.ucsc.edu or genome...@soe.ucsc.edu. Questions sent to those addresses will be archived in publicly-accessible forums for the benefit of other users. If your question contains sensitive data, you may send it instead to genom...@soe.ucsc.edu.

--
Jonathan Casper
UCSC Genome Bioinformatics Group


--


Natalia Rodchenko

unread,
May 29, 2015, 6:34:16 PM5/29/15
to Jonathan Casper, gen...@soe.ucsc.edu
Thank you Jonathan, I've downloaded the build from the link that you have provided

Best wishes,
Natalia
Reply all
Reply to author
Forward
0 new messages