Question about WGBS data

[JONGHUN LEE]

Hi. I am a Ph.D. student at University of Tokyo, Japan.

I am re-analyzing the WGBS data of h1_hESC and gm12878 cells that you provided in 2012.

Could I know the non-conversion rate of the two samples? 

Here are the samples that I am working on. 

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40832

Thank you.

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JONGHUN LEE
81-80-4735-7565
Department of Medical Genome Science
University of Tokyo

[Brian Lee]

Dear Jonghun,

Thank you for using the UCSC Genome Browser and your question about ENCODE data.

It is best to send your question to the lab that provided the data and also the current ENCODE portal at encod...@lists.stanford.edu.

The current ENCODE portal allows quick searches for GEO terms to find associated files:https://www.encodeproject.org/search/?searchTerm=GSE40832 However, even if the files were present, often for such questions about laboratory methods, it is best to contact the producing laboratory directly. There you will see the lab listed as Richard Myers, HAIB, also listed on the GEO page.

On the GEO page, http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40832, you may want to also note the following message: ***Previously submitted data files were in error and have been removed. New data files will be added soon.***

Thank you again for your inquiry and using the UCSC Genome Browser. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

All the best,

Brian Lee
UCSC Genomics Institute

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