hg18ToHg19.over.chain request

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Pedro Manuel Martínez García

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Apr 18, 2016, 11:40:43 AM4/18/16
to gen...@soe.ucsc.edu
To Whom It May Concern,

As indicated in the website http://hgdownload.cse.ucsc.edu/goldenPath/hg38/liftOver/, I am writing to gently ask for the LiftOver associated file hg18ToHg19.over.chain.

Thanks in advance.

Kind Regards,

Pedro.

Christopher Lee

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Apr 19, 2016, 11:04:46 AM4/19/16
to Pedro Manuel Martínez García, gen...@soe.ucsc.edu

Hi Pedro,

Thank you for your request for the liftOver file hg18ToHg19.over.chain.gz.

You can find that file here:
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/liftOver/hg18ToHg19.over.chain.gz

Liftover files are always located in the directory of the "from" organism, where
"from" refers to the first organism listed in the file name, which in your case is
hg18. The link you provided as an example refers to hg38, so if you had scrolled
down a little further on the "human" downloads page:
http://hgdownload.cse.ucsc.edu/downloads.html#human

To the section Mar. 2006 (hg18), you would have found this file.

Thank you again for your inquiry and using the UCSC Genome Browser. If you have
any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to
that address are archived on a publicly-accessible forum. If your question includes
sensitive data, you may send it instead to genom...@soe.ucsc.edu.



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