hg38 to rheMac8 lift over

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camille Simonet

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May 11, 2016, 11:46:43 AM5/11/16
to gen...@soe.ucsc.edu
Hi,

I want to liftOver hg38 to rheMac3. This pair of genomes is available from the UCSC website liftOver tool pullbar menu, however, I cannot find the chain file in the liftOver of rheMac8.

Is this chain of hg38torheMac8 available somewhere?

Thank you,
CS

Matthew Speir

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May 11, 2016, 11:57:56 AM5/11/16
to camille Simonet, gen...@soe.ucsc.edu
Hi Camille,

Thank you for your question about downloading the hg38ToRheMac8 LiftOver
chain file.

The LiftOver chain files are always found in the "LiftOver" directory
for your original or starting assembly. In this case, since you are
converting coordinates from hg38 to rheMac8, your original/starting
assembly is hg38. You can find the LiftOver files for hg38 on our
download server under the "LiftOver files" link for hg38 here:
http://hgdownload.soe.ucsc.edu/downloads.html#human.

I hope this is helpful. If you have any further questions, please reply
to gen...@soe.ucsc.edu. All messages sent to that address are archived
on a publicly-accessible Google Groups forum. If your question includes
sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Matthew Speir
UCSC Genome Bioinformatics Group
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