Table browser error with Assembly Hubs

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Juan L. Mateo

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Jun 22, 2016, 10:11:06 AM6/22/16
to gen...@soe.ucsc.edu
Hi all,

I am building an Assembly Hub following the tips from
http://genomewiki.ucsc.edu/index.php/Assembly_Hubs
Everything runs nicely but today I found that the table browser doesn't
work. I get this error message:
" Couldn't connect to database hub_26991_HdrR2.1.1 on mysqlrr as hguser.
Unknown database 'hub_26991_HdrR2.1.1'"

I am pretty sure that the table browser worked before with the assembly
hub, so I've been removing tracks to test if any of them causes the
problem but the result is the same. In the forum I see that previously
there were problems with assembly hubs and the table browser although
not exactly the one I am getting.
Is this a temporal problem or should I make any change to my assembly
hub to make it to work with the table browser?

Best regards,

--
=============================
Juan L. Mateo PhD.
Centre for Organismal Studies (COS) - University of Heidelberg
Im Neuenheimer Feld 230
69120 Heidelberg, Germany
http://www.cos.uni-heidelberg.de/index.php/j.mateo/main?l=_e
Tel: 0049 (0)6221 54 6493
Fax: 0049 (0)6221 54 5639

Matthew Speir

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Jun 22, 2016, 12:22:20 PM6/22/16
to Juan L. Mateo, gen...@soe.ucsc.edu
Hi Juan,

Thank you for bringing this issue to our attention. We have debugged the
issue and fixed it on our test server here:
http://genome-test.soe.ucsc.edu/cgi-bin/hgTables. I can let you know
when this is fixed on our public site.

Please let us know if you have any more problems.

I hope this is helpful. If you have any further questions, please reply
to gen...@soe.ucsc.edu. All messages sent to that address are archived
on a publicly-accessible Google Groups forum. If your question includes
sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Matthew Speir
UCSC Genome Bioinformatics Group

Matthew Speir

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Jun 24, 2016, 4:12:37 PM6/24/16
to Juan L. Mateo, gen...@soe.ucsc.edu
Hi Juan,

Thank you again for reporting this error. We have now fixed the issue on
our public site and you should be able to use the Table Browser with
your assembly hubs.

Please let us know if you continue having any issues.

I hope this is helpful. If you have any further questions, please reply
to gen...@soe.ucsc.edu. All messages sent to that address are archived
on a publicly-accessible Google Groups forum. If your question includes
sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Matthew Speir
UCSC Genome Bioinformatics Group


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